#!/bin/bash
#SBATCH -t 12:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --export=NONE
./single_job

module load QIIME2/2019.7

qiime metadata tabulate \
  --m-input-file /data/mramseylab/classifiers/taxonomy.qza \
  --o-visualization /data/mramseylab/classifiers/taxonomy.qzv

qiime metadata tabulate \
  --m-input-file /data/mramseylab/classifiers/custom_taxonomy.qza \
  --o-visualization /data/mramseylab/classifiers/custom_taxonomy.qzv

qiime taxa barplot \
  --i-table /data/mramseylab/proc_reads/table-single_Run3.qza \
  --i-taxonomy /data/mramseylab/classifiers/taxonomy.qza \
  --m-metadata-file /data/mramseylab/metadata/Serum.tsv \
  --o-visualization /data/mramseylab/offload/taxa-bar-plots.qzv

qiime taxa barplot \
  --i-table /data/mramseylab/proc_reads/table-single_Run3.qza \
  --i-taxonomy /data/mramseylab/classifiers/custom_taxonomy.qza \
  --m-metadata-file /data/mramseylab/metadata/Serum.tsv \
  --o-visualization /data/mramseylab/offload/custom_taxa-bar-plots.qzv