#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=24g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2019.7


array=( A S An J )

for i in "${array[@]}"
do

filtdir=/data/mramseylab/raw_reads/trip"$i"/filter/denoise-pseudo_feat_2_feq_5-"$i".qza
procdir=/data/mramseylab/raw_reads/trip"$i"
metadir=/data/mramseylab/metadata/plaque_meta_"$i".tsv


qiime diversity alpha \
  --i-table $filtdir \
  --p-metric pielou_e \
  --o-alpha-diversity $procdir/pielou_eveness-"$i".qza


qiime diversity alpha-group-significance \
  --i-alpha-diversity $procdir/pielou_eveness-"$i".qza \
  --m-metadata-file $metadir \
  --o-visualization $procdir/pielou-"$i".qzv


  done