#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=144g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2023.7

rawdir=/data/mramseylab/raw_reads/2024_AL_SUPP
clsdir=/data/mramseylab/16S/classifiers/silva-taxonomy_AL_2024
metadata=/data/mramseylab/16S/metadata/meta_BSFS.tsv
visdir=/data/mramseylab/16S/visualizations/AL_2024
procdir=/data/mramseylab/16S/proc_reads/2024_AL_SUPP_6000/medias

qiime taxa barplot \
  --i-table $procdir/rarefied_table.qza \
  --i-taxonomy $clsdir/silva-taxonomy-test-2024.qza \
  --m-metadata-file $metadata \
  --o-visualization $visdir/taxa-bar-test-2024.qzv