#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=24g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2024.2

tabledir=/data/mramseylab/raw_reads/2022_AL_SUPP/AL_2022
metadir=/data/mramseylab/16S/metadata/plaque_meta_3.tsv
visdir=/data/mramseylab/16S/visualizations/AL_2022

qiime feature-table summarize \
  --i-table $tabledir/denoise-table-1.qza \
  --o-visualization 2022_feature_table.qzv \
  --m-sample-metadata-file $metadir