#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=24g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL


module load QIIME2/2019.7

procdir=/data/mramseylab/proc_reads/fil-nocontrol/table-filtered_NoControls.qza
clsdir=/data/mramseylab/classifiers/silva-taxonomy-AL/silva-mod-taxonomy-AL.qza
metadata=/data/mramseylab/metadata/plaque_meta_3.tsv
visdir=/data/mramseylab/visualizations/
fil=AL_2022

mkdir $visdir$fil

qiime taxa barplot \
  --i-table $procdir \
  --i-taxonomy $clsdir \
  --m-metadata-file $metadata \
  --o-visualization $visdir$fil/taxa-bar-plots-beforefilter.qzv