#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=24g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2019.7

rawdir=/data/mramseylab/raw_reads/AL_2022
clsdir=/data/mramseylab/classifiers
visdir=/data/mramseylab/visualizations/al_2022_1

qiime metadata tabulate \
  --m-input-file $rawdir/rep-seqs-1.qza \
  --m-input-file $clsdir/silva-taxonomy-AL.qza \
  --o-visualization $visdir/tabulated-feature-metadata.qzv