#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=48g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2024.2

table=/data/mramseylab/16S/proc_reads/2023_AL_Master/2023_MasterFilteredSamples
clsdir=/data/mramseylab/16S/classifiers/homd-classifier
metadir=/data/mramseylab/16S/metadata/plaque_meta_S.tsv
visdir=/data/mramseylab/16S/visualizations/AL_2023

qiime taxa barplot \
  --i-table $table/filtered_samples_S.qza \
  --i-taxonomy $clsdir/2023-taxonomy-HOMD.qza \
  --m-metadata-file $metadir \
  --o-visualization $visdir/filtered-barplot-2023-subjectS.qzv