hpara_Essential_1000

input files:
Tp1_absolute_duplicates
Tp3_absolute_duplicates

gff: hpara

number of replicates: 2

to trim: 50
number of expected datasets: 1000
number of sites: 163746
number of sites shared by at least 2 samples: 145625
number of sites in all three samples: 137733

numreads: 6149776.5
numsites: 151583

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 559
number of genes with padj <= 0.01 in FALSE: 386

Mclust Unchanged FALSE: 1436
Mclust Reduced FALSE: 574

Mclust_reduced_mean_False: -2.67326862607284
Mclust_unchanged_mean_False: 0.159679654704102

Mclust_reduced_variance_False: 2.89793618612761
Mclust_unchanged_variance_False: 0.366065525302886

 Reduced and Uncertainty <=0.01 if FALSE: 392
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 205

 Reduced and Uncertainty <=0.05 if FALSE: 439
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 349

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 442
number of genes with padj <= 0.01 in TRUE: 292

Mclust Unchanged TRUE: 1059
Mclust Reduced TRUE: 951

Mclust_reduced_mean_TRUE: -0.846021424991941
Mclust_unchanged_mean_TRUE: 0.322562466219973

Mclust_reduced_variance_TRUE: 0.952241883947838
Mclust_unchanged_variance_TRUE: 0.176935361544772

 Reduced and Uncertainty <=0.01 if TRUE: 464
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 191

 Reduced and Uncertainty <=0.05 if TRUE: 600
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 271