Building DAG of jobs...
Using shell: /bin/bash
Provided cluster nodes: 10
Job stats:
job         count    min threads    max threads
--------  -------  -------------  -------------
all             1              1              1
assemble        1              1              1
download        1              1              1
quast           1              1              1
trimming        1              1              1
total           5              1              1

Select jobs to execute...

[Wed Apr 19 10:50:53 2023]
rule download:
    output: 00_reads/SRR341563_1.fastq.gz, 00_reads/SRR341563_2.fastq.gz
    jobid: 4
    resources: tmpdir=/tmp

Submitted job 4 with external jobid 'Submitted batch job 256553'.
[Wed Apr 19 10:54:14 2023]
Finished job 4.
1 of 5 steps (20%) done
Select jobs to execute...

[Wed Apr 19 10:54:14 2023]
rule trimming:
    input: 00_reads/SRR341563_1.fastq.gz
    output: 00_reads/SRR341563_trimmed.done
    jobid: 3
    wildcards: sample=SRR341563
    resources: tmpdir=/tmp

Submitted job 3 with external jobid 'Submitted batch job 256554'.
[Wed Apr 19 10:55:44 2023]
Finished job 3.
2 of 5 steps (40%) done
Select jobs to execute...

[Wed Apr 19 10:55:44 2023]
rule assemble:
    input: 00_reads/SRR341563_trimmed.done
    output: SRR341563.assembled
    jobid: 2
    wildcards: sample=SRR341563
    resources: tmpdir=/tmp

Submitted job 2 with external jobid 'Submitted batch job 256555'.
[Wed Apr 19 11:21:07 2023]
Finished job 2.
3 of 5 steps (60%) done
Select jobs to execute...

[Wed Apr 19 11:21:07 2023]
rule quast:
    input: SRR341563.assembled
    output: SRR341563.quast_spadeschecked
    jobid: 1
    wildcards: sample=SRR341563
    resources: tmpdir=/tmp

Submitted job 1 with external jobid 'Submitted batch job 256559'.
[Wed Apr 19 11:22:17 2023]
Finished job 1.
4 of 5 steps (80%) done
Select jobs to execute...

[Wed Apr 19 11:22:17 2023]
localrule all:
    input: SRR341563.quast_spadeschecked
    jobid: 0
    resources: tmpdir=/tmp

[Wed Apr 19 11:22:17 2023]
Finished job 0.
5 of 5 steps (100%) done
Complete log: /glfs/brick01/gv0/mramseylab/TnSeq_THP/snakemake/Snakemake_Training/.snakemake/log/2023-04-19T105053.171742.snakemake.log