FastQCFastQC Report
Wed 30 Mar 2022
TP6_S6_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTP6_S6_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17041772
Sequences flagged as poor quality0
Sequence length64-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACT490940.2880803709848952No Hit
CTTTCCCCAACATCGGGCGACGTGGTGCTTTCTGCTGAAATTTCAAAAAT424330.2489940600073748No Hit
TTCTTCTAAGGTCTCAATCGCTTCTAAACATTTTTGACGACGCGTTAAAT380690.22338639432566051No Hit
GCTCGATAATGCTACAAAACTAAATAATGTAATAGCTAATTTTGAATAAA186770.10959541061809769No Hit
AGTATTCCGTACGGCGAATTTCAAGATTTTCGTCAACTAACATGCTGATA181930.10675533037292131No Hit
GGTGCTGTAATCGGCTTAGTGAATGGTTTAGTTATCGCTTATCTCAATGT177990.10444336422292236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)