el1_Essential_1000

input files:
TP7_S7_R1_001_trimmed
TP8_S8_R1_001_trimmed
TP9_S9_R1_001_trimmed

gff: el1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 136772
number of sites shared by at least 2 samples: 82992
number of sites in all three samples: 58601

numreads: 15396236.3333333
numsites: 92788.3333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1115
number of genes with padj <= 0.01 in FALSE: 1051

Mclust Unchanged FALSE: 1319
Mclust Reduced FALSE: 714

Mclust_reduced_mean_False: -7.97939684899858
Mclust_unchanged_mean_False: 0.645075276768011

Mclust_reduced_variance_False: 9.06543069897428
Mclust_unchanged_variance_False: 1.49720707292227

 Reduced and Uncertainty <=0.01 if FALSE: 619
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 617

 Reduced and Uncertainty <=0.05 if FALSE: 652
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 652

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1115
number of genes with padj <= 0.01 in TRUE: 1051

Mclust Unchanged TRUE: 1344
Mclust Reduced TRUE: 689

Mclust_reduced_mean_TRUE: -0.517472504105025
Mclust_unchanged_mean_TRUE: 7.95017154354501

Mclust_reduced_variance_TRUE: 1.12441477152323
Mclust_unchanged_variance_TRUE: 8.42796564637135

 Reduced and Uncertainty <=0.01 if TRUE: 618
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 618

 Reduced and Uncertainty <=0.05 if TRUE: 646
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 646
