el1_Essential_1000

input files:
TP13_S13_R1_001_trimmed
TP14_S14_R1_001_trimmed
TP15_S15_R1_001_trimmed

gff: el1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 134756
number of sites shared by at least 2 samples: 81657
number of sites in all three samples: 54366

numreads: 13538419.6666667
numsites: 90259.6666666667

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1135
number of genes with padj <= 0.01 in FALSE: 1067

Mclust Unchanged FALSE: 1326
Mclust Reduced FALSE: 707

Mclust_reduced_mean_False: -7.74112457943949
Mclust_unchanged_mean_False: 0.630217618972231

Mclust_reduced_variance_False: 8.08676411449491
Mclust_unchanged_variance_False: 1.45324160885915

 Reduced and Uncertainty <=0.01 if FALSE: 618
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 618

 Reduced and Uncertainty <=0.05 if FALSE: 650
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 650

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1135
number of genes with padj <= 0.01 in TRUE: 1067

Mclust Unchanged TRUE: 1346
Mclust Reduced TRUE: 687

Mclust_reduced_mean_TRUE: -0.513138425532121
Mclust_unchanged_mean_TRUE: 7.67810207423393

Mclust_reduced_variance_TRUE: 1.08858871404444
Mclust_unchanged_variance_TRUE: 7.53627799970005

 Reduced and Uncertainty <=0.01 if TRUE: 625
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 625

 Reduced and Uncertainty <=0.05 if TRUE: 644
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 644
