ATCC_Essential_1000

input files:
TP4_S4_R1_001_trimmed
TP5_S5_R1_001_trimmed
TP6_S6_R1_001_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 203471
number of sites shared by at least 2 samples: 136600
number of sites in all three samples: 107494

numreads: 15137096
numsites: 149188.333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1254
number of genes with padj <= 0.01 in FALSE: 1210

Mclust Unchanged FALSE: 1316
Mclust Reduced FALSE: 694

Mclust_reduced_mean_False: -7.37317412439046
Mclust_unchanged_mean_False: 0.563510948919821

Mclust_reduced_variance_False: 11.69170722081
Mclust_unchanged_variance_False: 0.841133415514238

 Reduced and Uncertainty <=0.01 if FALSE: 599
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 599

 Reduced and Uncertainty <=0.05 if FALSE: 631
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 631

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1254
number of genes with padj <= 0.01 in TRUE: 1210

Mclust Unchanged TRUE: 1335
Mclust Reduced TRUE: 675

Mclust_reduced_mean_TRUE: -0.486962808768557
Mclust_unchanged_mean_TRUE: 7.44431516972539

Mclust_reduced_variance_TRUE: 0.747793996407141
Mclust_unchanged_variance_TRUE: 10.7697159455593

 Reduced and Uncertainty <=0.01 if TRUE: 593
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 593

 Reduced and Uncertainty <=0.05 if TRUE: 619
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 619
