EL1_Essential_1000

input files:
TP7_trimmed
TP8_trimmed
TP9_trimmed

gff: EL1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 105315
number of sites shared by at least 2 samples: 68670
number of sites in all three samples: 50338

numreads: 24640789.6666667
numsites: 74774.3333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1164
number of genes with padj <= 0.01 in FALSE: 1102

Mclust Unchanged FALSE: 1322
Mclust Reduced FALSE: 711

Mclust_reduced_mean_False: -8.77535790654202
Mclust_unchanged_mean_False: 0.702731462063306

Mclust_reduced_variance_False: 10.1595515095327
Mclust_unchanged_variance_False: 1.72114719257161

 Reduced and Uncertainty <=0.01 if FALSE: 624
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 624

 Reduced and Uncertainty <=0.05 if FALSE: 649
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 649

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1164
number of genes with padj <= 0.01 in TRUE: 1102

Mclust Unchanged TRUE: 1338
Mclust Reduced TRUE: 695

Mclust_reduced_mean_TRUE: -0.583363314311284
Mclust_unchanged_mean_TRUE: 8.68993311129858

Mclust_reduced_variance_TRUE: 1.25273652070637
Mclust_unchanged_variance_TRUE: 9.70970282034672

 Reduced and Uncertainty <=0.01 if TRUE: 627
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 627

 Reduced and Uncertainty <=0.05 if TRUE: 650
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 650
