EL1_Essential_1000

input files:
TP1_trimmed
TP2_trimmed
TP3_trimmed

gff: EL1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 110877
number of sites shared by at least 2 samples: 73056
number of sites in all three samples: 54313

numreads: 19506376.3333333
numsites: 79415.3333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1159
number of genes with padj <= 0.01 in FALSE: 1101

Mclust Unchanged FALSE: 1478
Mclust Reduced FALSE: 555

Mclust_reduced_mean_False: -9.75293614852729
Mclust_unchanged_mean_False: 0.279898763557577

Mclust_reduced_variance_False: 3.07032591540271
Mclust_unchanged_variance_False: 2.97247266945424

 Reduced and Uncertainty <=0.01 if FALSE: 522
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 522

 Reduced and Uncertainty <=0.05 if FALSE: 532
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 532

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1159
number of genes with padj <= 0.01 in TRUE: 1101

Mclust Unchanged TRUE: 1404
Mclust Reduced TRUE: 629

Mclust_reduced_mean_TRUE: -0.457429615138889
Mclust_unchanged_mean_TRUE: 8.80745501438202

Mclust_reduced_variance_TRUE: 1.50065555029707
Mclust_unchanged_variance_TRUE: 6.5898383408455

 Reduced and Uncertainty <=0.01 if TRUE: 564
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 564

 Reduced and Uncertainty <=0.05 if TRUE: 588
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 588
