FastQCFastQC Report
Mon 25 Sep 2023
TP10_S10_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTP10_S10_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62642373
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACT1565780.24995540957555998No Hit
TAAGGGCTTGGATTGTTATGTTTTAATTGTGCATAGCTCGCAAGGGTATT879200.1403522819928932No Hit
TGTACAGGCTGAAGGCATGGTAACCATCGTATTCACAGCAGGCTCCAATG857040.13681474039944178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)