EL1_Essential_1000

input files:
TP1_trimmed
TP2_trimmed
TP3_trimmed

gff: EL1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 144946
number of sites shared by at least 2 samples: 84094
number of sites in all three samples: 55206

numreads: 19396672.6666667
numsites: 94748.6666666667

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1074
number of genes with padj <= 0.01 in FALSE: 997

Mclust Unchanged FALSE: 1387
Mclust Reduced FALSE: 646

Mclust_reduced_mean_False: -7.82591794166394
Mclust_unchanged_mean_False: 0.532868102824262

Mclust_reduced_variance_False: 13.0454664039405
Mclust_unchanged_variance_False: 1.59266854133167

 Reduced and Uncertainty <=0.01 if FALSE: 524
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 524

 Reduced and Uncertainty <=0.05 if FALSE: 551
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 551

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1074
number of genes with padj <= 0.01 in TRUE: 997

Mclust Unchanged TRUE: 1410
Mclust Reduced TRUE: 623

Mclust_reduced_mean_TRUE: -0.43069231160683
Mclust_unchanged_mean_TRUE: 7.86471790694596

Mclust_reduced_variance_TRUE: 1.17600531566798
Mclust_unchanged_variance_TRUE: 12.0903865300899

 Reduced and Uncertainty <=0.01 if TRUE: 530
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 530

 Reduced and Uncertainty <=0.05 if TRUE: 548
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 548
