FastQCFastQC Report
Thu 11 May 2023
Tp11_S11_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTp11_S11_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15255279
Sequences flagged as poor quality0
Sequence length63-76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATCATTAATGGTACAAGAGTGATGAAAATACCGTAGCCCATCCATTCAAGACCGGAACCATTGGTGAGTGTGT417520.2736888653429413No Hit
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACTAATAACGTAACGTGACTGGCAAG254400.16676194516009835No Hit
TAAACGTGCAATGATACCTACAATCATTAATGGTACAAGAGTGATGAAAA231800.1519474012897437No Hit
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACT180690.11844424477585758No Hit
GCGGCCGCGAAAATTCGTTTTTATTATTCAACATAGTTCCCTTCAAGAGCGATACAACGATTATAACGACCTTCC178730.11715944362603922No Hit
TTCTTCTAAGGTCTCAATCGCTTCTAAACATTTTTGACGACGCGTTAAATAAATTGCGGCTGTTTGCTTATGTAC154300.1011453150086603No Hit
AACGTGCAATGATACCTACAATCATTAATGGTACAAGAGTGATGAAAATACCGTAGCCCATCCATTCAAGACCGG153750.10078478407376226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)