ATCC_Essential_1000

input files:
Tp10_trimmed
Tp11_trimmed
Tp12_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 195493
number of sites shared by at least 2 samples: 130385
number of sites in all three samples: 103683

numreads: 12585679.3333333
numsites: 143187

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1250
number of genes with padj <= 0.01 in FALSE: 1196

Mclust Unchanged FALSE: 1340
Mclust Reduced FALSE: 670

Mclust_reduced_mean_False: -6.89821748478512
Mclust_unchanged_mean_False: 0.516067088450282

Mclust_reduced_variance_False: 9.64647721044506
Mclust_unchanged_variance_False: 0.828857346500131

 Reduced and Uncertainty <=0.01 if FALSE: 589
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 589

 Reduced and Uncertainty <=0.05 if FALSE: 605
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 605

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1250
number of genes with padj <= 0.01 in TRUE: 1196

Mclust Unchanged TRUE: 1347
Mclust Reduced TRUE: 663

Mclust_reduced_mean_TRUE: -0.461979058673583
Mclust_unchanged_mean_TRUE: 6.88443115400504

Mclust_reduced_variance_TRUE: 0.708239925504267
Mclust_unchanged_variance_TRUE: 9.1705823489961

 Reduced and Uncertainty <=0.01 if TRUE: 591
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 591

 Reduced and Uncertainty <=0.05 if TRUE: 608
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 608
