FastQCFastQC Report
Thu 11 May 2023
Tp6_S6_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTp6_S6_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21708645
Sequences flagged as poor quality0
Sequence length63-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACTAATAACGTAACGTGACTGGCAAG513580.23657856121374687No Hit
CAACAGCATTGGCTTAATCCCATTCAAGGTTGCTATCGTTTTCATTTTGA484050.22297568549303745No Hit
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACT370020.1704482246588859No Hit
GCGGCCGCGAAAATTCGTTTTTATTATTCAACATAGTTCCCTTCAAGAGCGATACAACGATTATAACGACCTTCC339930.1565873871906791No Hit
CTCATCCACAGCAAGCGGCATTGTGTCTATTGCTCATGGTAACGCCGCTAAAGCTACAGGTGATGGCTCTATTG339760.15650907737447456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)