ATCC_Essential_1000

input files:
Tp4_trimmed
Tp5_trimmed
Tp6_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 225774
number of sites shared by at least 2 samples: 147573
number of sites in all three samples: 118435

numreads: 14035594.3333333
numsites: 163927.333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1223
number of genes with padj <= 0.01 in FALSE: 1179

Mclust Unchanged FALSE: 1306
Mclust Reduced FALSE: 704

Mclust_reduced_mean_False: -6.36849788673117
Mclust_unchanged_mean_False: 0.546950289135959

Mclust_reduced_variance_False: 7.98794910810669
Mclust_unchanged_variance_False: 0.770531889228393

 Reduced and Uncertainty <=0.01 if FALSE: 603
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 603

 Reduced and Uncertainty <=0.05 if FALSE: 635
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 635

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1223
number of genes with padj <= 0.01 in TRUE: 1179

Mclust Unchanged TRUE: 1325
Mclust Reduced TRUE: 685

Mclust_reduced_mean_TRUE: -0.471971353893241
Mclust_unchanged_mean_TRUE: 6.43380039870043

Mclust_reduced_variance_TRUE: 0.681583710473722
Mclust_unchanged_variance_TRUE: 7.38337413976959

 Reduced and Uncertainty <=0.01 if TRUE: 599
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 599

 Reduced and Uncertainty <=0.05 if TRUE: 627
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 627
