FastQCFastQC Report
Thu 4 May 2023
TP3_S3_L001_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTP3_S3_L001_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1456529
Sequences flagged as poor quality0
Sequence length61
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCGCGAAAATTCGTTTTTATTATTCAACATAGTTCCCTTCAAGAGCGATACAACGAT221001.5173058689528323No Hit
TTTCCTTCACCAATATTGACTAATTGTTTGCCTGGACAACCGCCGCCTAATGCAAAGCAAA33490.22993019706439075No Hit
CAATCATTAATGGTACAAGAGTGATGAAAATACCGTAGCCCATCCATTCAAGACCGGAACC29080.19965273605949485No Hit
GCGGCCGCATCGATTTTCGTTCGTGAATACATGTTATAATAACTATAACTAATAACGTAAC25210.17308271925928012No Hit
AATCAAAAAAGCCCTAACACAGGTAAACCAATTAACTGTGTAAACTGTCACGGTAATATTT24230.16635439459152548No Hit
TCATGCGCGTATTAAAATTTGGTGGCACTTCATTAGCCAACCCTGAGCGTTTCTCGCAAGC23970.16456932886334566No Hit
TTTATTGGTGGCATTTTTTATGCCTTTTTTAATCCCTATTATCGTCGGATTATCTTTGCAT22390.15372162174594534No Hit
TGCTTCCATACGCCTTTAAATTGATATTATTTCTCTTTCTTCAGCAAGAAAATACCTTGTT16440.11287107912029215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)