ATCC_Essential_1000

input files:
TP1_trimmed
TP2_trimmed
TP3_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 140548
number of sites shared by at least 2 samples: 102043
number of sites in all three samples: 75671

numreads: 1161012
numsites: 106087.333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1264
number of genes with padj <= 0.01 in FALSE: 1212

Mclust Unchanged FALSE: 1416
Mclust Reduced FALSE: 594

Mclust_reduced_mean_False: -6.01535914739078
Mclust_unchanged_mean_False: 0.418085215721343

Mclust_reduced_variance_False: 3.3732068944862
Mclust_unchanged_variance_False: 0.968209282806022

 Reduced and Uncertainty <=0.01 if FALSE: 521
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 521

 Reduced and Uncertainty <=0.05 if FALSE: 538
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 538

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1263
number of genes with padj <= 0.01 in TRUE: 1211

Mclust Unchanged TRUE: 1416
Mclust Reduced TRUE: 594

Mclust_reduced_mean_TRUE: -0.400273760446233
Mclust_unchanged_mean_TRUE: 5.80899595811332

Mclust_reduced_variance_TRUE: 0.819866124775853
Mclust_unchanged_variance_TRUE: 3.39182503762948

 Reduced and Uncertainty <=0.01 if TRUE: 529
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 529

 Reduced and Uncertainty <=0.05 if TRUE: 543
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 543
