ATCC_Essential_1000

input files:
Tp1_trimmed
Tp2_trimmed
Tp3_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 195115
number of sites shared by at least 2 samples: 142818
number of sites in all three samples: 119844

numreads: 6331412.33333333
numsites: 152592.333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1215
number of genes with padj <= 0.01 in FALSE: 1157

Mclust Unchanged FALSE: 1430
Mclust Reduced FALSE: 580

Mclust_reduced_mean_False: -6.64764500413736
Mclust_unchanged_mean_False: 0.340288034782852

Mclust_reduced_variance_False: 8.24141528371998
Mclust_unchanged_variance_False: 0.68481662422714

 Reduced and Uncertainty <=0.01 if FALSE: 497
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 497

 Reduced and Uncertainty <=0.05 if FALSE: 524
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 524

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1215
number of genes with padj <= 0.01 in TRUE: 1157

Mclust Unchanged TRUE: 1434
Mclust Reduced TRUE: 576

Mclust_reduced_mean_TRUE: -0.312983457754085
Mclust_unchanged_mean_TRUE: 6.6218511464982

Mclust_reduced_variance_TRUE: 0.611051045543998
Mclust_unchanged_variance_TRUE: 7.83355888301838

 Reduced and Uncertainty <=0.01 if TRUE: 505
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 505

 Reduced and Uncertainty <=0.05 if TRUE: 519
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 519
