EL1_Essential_1000

input files:
TP4_trimmed
TP5_trimmed
TP6_trimmed

gff: EL1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 95781
number of sites shared by at least 2 samples: 62356
number of sites in all three samples: 46767

numreads: 1194267
numsites: 68301.3333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1198
number of genes with padj <= 0.01 in FALSE: 1140

Mclust Unchanged FALSE: 1392
Mclust Reduced FALSE: 641

Mclust_reduced_mean_False: -6.17054788937649
Mclust_unchanged_mean_False: 0.498704795226587

Mclust_reduced_variance_False: 2.88339439768825
Mclust_unchanged_variance_False: 1.4196342438984

 Reduced and Uncertainty <=0.01 if FALSE: 558
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 558

 Reduced and Uncertainty <=0.05 if FALSE: 580
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 580

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1198
number of genes with padj <= 0.01 in TRUE: 1140

Mclust Unchanged TRUE: 1406
Mclust Reduced TRUE: 627

Mclust_reduced_mean_TRUE: -0.448821085370037
Mclust_unchanged_mean_TRUE: 5.92389866824197

Mclust_reduced_variance_TRUE: 1.1330445488862
Mclust_unchanged_variance_TRUE: 3.03764678008001

 Reduced and Uncertainty <=0.01 if TRUE: 552
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 552

 Reduced and Uncertainty <=0.05 if TRUE: 576
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 576
