EL1_Essential_1000

input files:
TP10_trimmed
TP11_trimmed

gff: EL1

number of replicates: 2

to trim: 50
number of expected datasets: 1000
number of sites: 94398
number of sites shared by at least 2 samples: 52093
number of sites in all three samples: 0

numreads: 36259618.5
numsites: 73245.5

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 537
number of genes with padj <= 0.01 in FALSE: 485

Mclust Unchanged FALSE: 1160
Mclust Reduced FALSE: 873

Mclust_reduced_mean_False: -3.0410576893424
Mclust_unchanged_mean_False: -0.816781016964465

Mclust_reduced_variance_False: 5.80022171855639
Mclust_unchanged_variance_False: 0.411541407206651

 Reduced and Uncertainty <=0.01 if FALSE: 619
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 440

 Reduced and Uncertainty <=0.05 if FALSE: 664
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 503

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 421
number of genes with padj <= 0.01 in TRUE: 397

Mclust Unchanged TRUE: 1232
Mclust Reduced TRUE: 801

Mclust_reduced_mean_TRUE: -1.7728124085359
Mclust_unchanged_mean_TRUE: -0.730087057147553

Mclust_reduced_variance_TRUE: 1.90438725914334
Mclust_unchanged_variance_TRUE: 0.294609415312091

 Reduced and Uncertainty <=0.01 if TRUE: 379
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 355

 Reduced and Uncertainty <=0.05 if TRUE: 424
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 385
