el1_Essential_1000

input files:
TP1_trimmed
TP2_trimmed
TP3_trimmed

gff: el1

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 144946
number of sites shared by at least 2 samples: 84094
number of sites in all three samples: 55206

numreads: 19396672.6666667
numsites: 94748.6666666667

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1059
number of genes with padj <= 0.01 in FALSE: 988

Mclust Unchanged FALSE: 1392
Mclust Reduced FALSE: 641

Mclust_reduced_mean_False: -7.83729464134251
Mclust_unchanged_mean_False: 0.520939679555905

Mclust_reduced_variance_False: 13.0299409639472
Mclust_unchanged_variance_False: 1.56842814511598

 Reduced and Uncertainty <=0.01 if FALSE: 532
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 532

 Reduced and Uncertainty <=0.05 if FALSE: 551
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 551

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1059
number of genes with padj <= 0.01 in TRUE: 988

Mclust Unchanged TRUE: 1414
Mclust Reduced TRUE: 619

Mclust_reduced_mean_TRUE: -0.420949701585815
Mclust_unchanged_mean_TRUE: 7.86084044267038

Mclust_reduced_variance_TRUE: 1.15773914114017
Mclust_unchanged_variance_TRUE: 12.1451921807413

 Reduced and Uncertainty <=0.01 if TRUE: 531
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 531

 Reduced and Uncertainty <=0.05 if TRUE: 549
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 549
