EL1_Essential_1000

input files:
TP1_trimmed
TP2_trimmed
TP3_trimmed

gff: EL1

number of replicates: 3

to trim: 50
number of expected datasets: 1000
number of sites: 144946
number of sites shared by at least 2 samples: 84094
number of sites in all three samples: 55206

numreads: 19396672.6666667
numsites: 94748.6666666667

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 556
number of genes with padj <= 0.01 in FALSE: 470

Mclust Unchanged FALSE: 1176
Mclust Reduced FALSE: 857

Mclust_reduced_mean_False: -2.55911557733075
Mclust_unchanged_mean_False: -0.407712085304318

Mclust_reduced_variance_False: 4.92294153965237
Mclust_unchanged_variance_False: 0.432696020986274

 Reduced and Uncertainty <=0.01 if FALSE: 555
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 413

 Reduced and Uncertainty <=0.05 if FALSE: 611
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 510

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 428
number of genes with padj <= 0.01 in TRUE: 348

Mclust Unchanged TRUE: 368
Mclust Reduced TRUE: 1665

Mclust_reduced_mean_TRUE: -1.06719204887276
Mclust_unchanged_mean_TRUE: NA

Mclust_reduced_variance_TRUE: 1.43293328727294
Mclust_unchanged_variance_TRUE: NA

 Reduced and Uncertainty <=0.01 if TRUE: 1665
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 329

 Reduced and Uncertainty <=0.05 if TRUE: 1665
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 414