ATCC_Essential_1000

input files:
Tp1_trimmed
Tp2_trimmed
Tp3_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 1000
number of sites: 576
number of sites shared by at least 2 samples: 402
number of sites in all three samples: 307

numreads: 17860.6666666667
numsites: 428.333333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 11
number of genes with padj <= 0.01 in FALSE: 8

Mclust Unchanged FALSE: 10
Mclust Reduced FALSE: 2000

Mclust_reduced_mean_False: 0.0100441828404044
Mclust_unchanged_mean_False: NA

Mclust_reduced_variance_False: 0.0288876888066183
Mclust_unchanged_variance_False: NA

 Reduced and Uncertainty <=0.01 if FALSE: 2000
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 0

 Reduced and Uncertainty <=0.05 if FALSE: 2000
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 0

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 11
number of genes with padj <= 0.01 in TRUE: 8

Mclust Unchanged TRUE: 2009
Mclust Reduced TRUE: 1

Mclust_reduced_mean_TRUE: 0.00959242560232319
Mclust_unchanged_mean_TRUE: NA

Mclust_reduced_variance_TRUE: 0.0244053226763986
Mclust_unchanged_variance_TRUE: NA

 Reduced and Uncertainty <=0.01 if TRUE: 1
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 0

 Reduced and Uncertainty <=0.05 if TRUE: 1
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 0
