ATCC_Essential_1000

input files:
Tp1_trimmed
Tp2_trimmed
Tp3_trimmed

gff: ATCC

number of replicates: 3

to trim: 50
number of expected datasets: 100
number of sites: 195115
number of sites shared by at least 2 samples: 142818
number of sites in all three samples: 119844

numreads: 6331412.33333333
numsites: 152592.333333333

Analyses with betaPrior = FALSE (no l2fc shrinkage):

number of genes with pvalue <= 0.01 in FALSE: 1219
number of genes with padj <= 0.01 in FALSE: 1173

Mclust Unchanged FALSE: 1434
Mclust Reduced FALSE: 576

Mclust_reduced_mean_False: -6.68722886271743
Mclust_unchanged_mean_False: 0.347583756271535

Mclust_reduced_variance_False: 8.07110907242826
Mclust_unchanged_variance_False: 0.700643211663989

 Reduced and Uncertainty <=0.01 if FALSE: 495
Reduced and Uncertainty <=0.01 and padj <=0.01 if FALSE: 495

 Reduced and Uncertainty <=0.05 if FALSE: 518
Reduced and Uncertainty <=0.05 and padj <=0.05 if FALSE: 518

Analyses with betaPrior = TRUE (l2fc shrinkage):

number of genes with pvalue <= 0.01 in TRUE: 1219
number of genes with padj <= 0.01 in TRUE: 1173

Mclust Unchanged TRUE: 1437
Mclust Reduced TRUE: 573

Mclust_reduced_mean_TRUE: -0.323791309833476
Mclust_unchanged_mean_TRUE: 6.63561145838657

Mclust_reduced_variance_TRUE: 0.619978052933133
Mclust_unchanged_variance_TRUE: 7.76009499286525

 Reduced and Uncertainty <=0.01 if TRUE: 503
Reduced and Uncertainty <=0.01 and padj <=0.01 if TRUE: 503

 Reduced and Uncertainty <=0.05 if TRUE: 518
Reduced and Uncertainty <=0.05 and padj <=0.05 if TRUE: 518
