This is cutadapt 2.8 with Python 3.7.4 Command line parameters: -a C{9} -m 20 -o TP50.trim.fastq TP50.fastq Processing reads on 1 core in single-end mode ... Finished in 71.96 s (11 us/read; 5.31 M reads/minute). === Summary === Total reads processed: 6,372,889 Reads with adapters: 517,507 (8.1%) Reads that were too short: 21,779 (0.3%) Reads written (passing filters): 6,351,110 (99.7%) Total basepairs processed: 379,060,774 bp Total written (filtered): 371,605,783 bp (98.0%) === Adapter 1 === Sequence: CCCCCCCCC; Type: regular 3'; Length: 9; Trimmed: 517507 times; Reverse-complemented: 0 times No. of allowed errors: 0-9 bp: 0 Bases preceding removed adapters: A: 53.9% C: 0.0% G: 16.3% T: 29.8% none/other: 0.0% Overview of removed sequences length count expect max.err error counts 3 107827 99576.4 0 107827 4 50673 24894.1 0 50673 5 31783 6223.5 0 31783 6 22137 1555.9 0 22137 7 19125 389.0 0 19125 8 15159 97.2 0 15159 9 14648 24.3 0 14648 10 16552 24.3 0 16552 11 18990 24.3 0 18990 12 11674 24.3 0 11674 13 10040 24.3 0 10040 14 9808 24.3 0 9808 15 9052 24.3 0 9052 16 9464 24.3 0 9464 17 9458 24.3 0 9458 18 9339 24.3 0 9339 19 9737 24.3 0 9737 20 9162 24.3 0 9162 21 8479 24.3 0 8479 22 7474 24.3 0 7474 23 7038 24.3 0 7038 24 7075 24.3 0 7075 25 7657 24.3 0 7657 26 7406 24.3 0 7406 27 7021 24.3 0 7021 28 6629 24.3 0 6629 29 6212 24.3 0 6212 30 5861 24.3 0 5861 31 6057 24.3 0 6057 32 5866 24.3 0 5866 33 5450 24.3 0 5450 34 4858 24.3 0 4858 35 3895 24.3 0 3895 36 3108 24.3 0 3108 37 2866 24.3 0 2866 38 2747 24.3 0 2747 39 3232 24.3 0 3232 40 2980 24.3 0 2980 41 2410 24.3 0 2410 42 2288 24.3 0 2288 43 2370 24.3 0 2370 44 2344 24.3 0 2344 45 2236 24.3 0 2236 46 2090 24.3 0 2090 47 1916 24.3 0 1916 48 1567 24.3 0 1567 49 1090 24.3 0 1090 50 851 24.3 0 851 51 610 24.3 0 610 52 418 24.3 0 418 53 336 24.3 0 336 54 193 24.3 0 193 55 92 24.3 0 92 56 59 24.3 0 59 57 21 24.3 0 21 58 39 24.3 0 39 59 18 24.3 0 18 60 20 24.3 0 20