This is cutadapt 2.8 with Python 3.7.4 Command line parameters: -a C{9} -m 20 -o TP1.trim.fastq TP1.fastq Processing reads on 1 core in single-end mode ... Finished in 42.18 s (10 us/read; 5.81 M reads/minute). === Summary === Total reads processed: 4,081,667 Reads with adapters: 379,120 (9.3%) Reads that were too short: 20,007 (0.5%) Reads written (passing filters): 4,061,660 (99.5%) Total basepairs processed: 242,280,312 bp Total written (filtered): 236,309,191 bp (97.5%) === Adapter 1 === Sequence: CCCCCCCCC; Type: regular 3'; Length: 9; Trimmed: 379120 times; Reverse-complemented: 0 times No. of allowed errors: 0-9 bp: 0 Bases preceding removed adapters: A: 52.9% C: 0.0% G: 16.5% T: 30.5% none/other: 0.0% Overview of removed sequences length count expect max.err error counts 3 66641 63776.0 0 66641 4 32016 15944.0 0 32016 5 20996 3986.0 0 20996 6 15363 996.5 0 15363 7 13525 249.1 0 13525 8 11418 62.3 0 11418 9 11527 15.6 0 11527 10 14357 15.6 0 14357 11 16816 15.6 0 16816 12 9435 15.6 0 9435 13 7515 15.6 0 7515 14 7566 15.6 0 7566 15 6824 15.6 0 6824 16 7259 15.6 0 7259 17 7127 15.6 0 7127 18 7221 15.6 0 7221 19 7610 15.6 0 7610 20 7341 15.6 0 7341 21 6414 15.6 0 6414 22 5739 15.6 0 5739 23 5322 15.6 0 5322 24 5316 15.6 0 5316 25 5795 15.6 0 5795 26 5789 15.6 0 5789 27 5347 15.6 0 5347 28 5118 15.6 0 5118 29 5283 15.6 0 5283 30 4896 15.6 0 4896 31 4691 15.6 0 4691 32 4898 15.6 0 4898 33 4487 15.6 0 4487 34 4172 15.6 0 4172 35 3195 15.6 0 3195 36 2606 15.6 0 2606 37 2448 15.6 0 2448 38 2431 15.6 0 2431 39 2762 15.6 0 2762 40 2539 15.6 0 2539 41 2078 15.6 0 2078 42 2067 15.6 0 2067 43 2205 15.6 0 2205 44 2179 15.6 0 2179 45 2171 15.6 0 2171 46 2175 15.6 0 2175 47 1555 15.6 0 1555 48 1255 15.6 0 1255 49 1105 15.6 0 1105 50 886 15.6 0 886 51 592 15.6 0 592 52 400 15.6 0 400 53 341 15.6 0 341 54 141 15.6 0 141 55 65 15.6 0 65 56 29 15.6 0 29 57 19 15.6 0 19 58 27 15.6 0 27 59 11 15.6 0 11 60 14 15.6 0 14