Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11505:23858:1893 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11505:23858:1893 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12601:11940:19592 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12601:11940:19592 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22411:12028:3496 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22411:12028:3496 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23607:2089:9433 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23607:2089:9433 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:20956:6790 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:20956:6790 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12110:7249:9935 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12110:7249:9935 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22208:20853:13039 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22208:20853:13039 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23207:24119:4440 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23207:24119:4440 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11401:24729:19703 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11401:24729:19703 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11401:24732:3465 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11401:24732:3465 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11410:7345:8323 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11410:7345:8323 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11504:23938:6022 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11504:23938:6022 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11508:8808:15440 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11508:8808:15440 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11608:13142:3020 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11608:13142:3020 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13410:11555:1149 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13410:11555:1149 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13607:8130:2550 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13607:8130:2550 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22505:21004:12902 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22505:21004:12902 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23409:13462:17412 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23409:13462:17412 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23508:11224:5208 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23508:11224:5208 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23610:17087:18451 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23610:17087:18451 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11211:17947:1112 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11211:17947:1112 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21307:6868:14663 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21307:6868:14663 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22111:20342:7325 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22111:20342:7325 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22112:15865:9508 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22112:15865:9508 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23206:25764:1586 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23206:25764:1586 2:N:0:GTCTTAGT' because it was < 2 characters long
1228422 reads; of these:
  1228422 (100.00%) were paired; of these:
    296762 (24.16%) aligned concordantly 0 times
    173949 (14.16%) aligned concordantly exactly 1 time
    757711 (61.68%) aligned concordantly >1 times
    ----
    296762 pairs aligned concordantly 0 times; of these:
      2166 (0.73%) aligned discordantly 1 time
    ----
    294596 pairs aligned 0 times concordantly or discordantly; of these:
      589192 mates make up the pairs; of these:
        448901 (76.19%) aligned 0 times
        7164 (1.22%) aligned exactly 1 time
        133127 (22.59%) aligned >1 times
81.73% overall alignment rate
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11403:11318:4599 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11403:11318:4599 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:9889:19347 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:9889:19347 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13407:8477:11886 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13407:8477:11886 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13408:8582:8093 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13408:8582:8093 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23612:18088:18777 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23612:18088:18777 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11112:13443:9509 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11112:13443:9509 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11112:7328:8836 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11112:7328:8836 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11208:26149:6567 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11208:26149:6567 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:15104:15702 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:15104:15702 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13303:17998:13443 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13303:17998:13443 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21208:20655:2818 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21208:20655:2818 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21307:19205:13123 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21307:19205:13123 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22301:5208:2024 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22301:5208:2024 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22309:19844:11822 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22309:19844:11822 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22309:7266:5225 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22309:7266:5225 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23311:6435:4366 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23311:6435:4366 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23311:6437:17251 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23311:6437:17251 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11402:3469:2649 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11402:3469:2649 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11406:23258:9630 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11406:23258:9630 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12403:10910:2648 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12403:10910:2648 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12510:17620:4795 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12510:17620:4795 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13507:19180:15331 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13507:19180:15331 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13602:23085:19074 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13602:23085:19074 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21508:3812:3375 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21508:3812:3375 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23509:12906:3692 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23509:12906:3692 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23610:1110:11365 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23610:1110:11365 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13102:19920:4215 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13102:19920:4215 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23201:16151:6065 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23201:16151:6065 2:N:0:GTCTTAGT' because it was < 2 characters long
1788189 reads; of these:
  1788189 (100.00%) were paired; of these:
    515776 (28.84%) aligned concordantly 0 times
    245760 (13.74%) aligned concordantly exactly 1 time
    1026653 (57.41%) aligned concordantly >1 times
    ----
    515776 pairs aligned concordantly 0 times; of these:
      2700 (0.52%) aligned discordantly 1 time
    ----
    513076 pairs aligned 0 times concordantly or discordantly; of these:
      1026152 mates make up the pairs; of these:
        840111 (81.87%) aligned 0 times
        9813 (0.96%) aligned exactly 1 time
        176228 (17.17%) aligned >1 times
76.51% overall alignment rate
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11402:25061:10778 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11402:25061:10778 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11408:24871:5965 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11408:24871:5965 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11409:6155:9206 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11409:6155:9206 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11412:13011:12049 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11412:13011:12049 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11506:18863:10444 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11506:18863:10444 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11606:15289:7782 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11606:15289:7782 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11607:15317:11133 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11607:15317:11133 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11608:1668:11174 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11608:1668:11174 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12409:3351:1573 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12409:3351:1573 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:15890:15964 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:15890:15964 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:21010:5121 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:21010:5121 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12412:17498:9519 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12412:17498:9519 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12412:21148:3659 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12412:21148:3659 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12508:6034:14336 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12508:6034:14336 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12601:3877:3147 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12601:3877:3147 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12611:23298:2696 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12611:23298:2696 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13408:13205:7727 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13408:13205:7727 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13503:6427:4883 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13503:6427:4883 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13506:12459:11660 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13506:12459:11660 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13509:7530:13742 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13509:7530:13742 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13601:14150:4862 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13601:14150:4862 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13601:21917:12110 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13601:21917:12110 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13605:23911:18218 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13605:23911:18218 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13609:18840:5600 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13609:18840:5600 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13609:8758:10497 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13609:8758:10497 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21410:13483:8400 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21410:13483:8400 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21505:21721:3336 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21505:21721:3336 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21508:21269:7495 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21508:21269:7495 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21602:26289:5832 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21602:26289:5832 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22401:25750:4152 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22401:25750:4152 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22409:13038:19983 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22409:13038:19983 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22411:20612:1289 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22411:20612:1289 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22509:4894:15093 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22509:4894:15093 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22510:8068:20397 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22510:8068:20397 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22611:17471:13265 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22611:17471:13265 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22612:14326:1136 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22612:14326:1136 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23402:17559:4311 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23402:17559:4311 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23408:4046:8790 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23408:4046:8790 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23501:20506:8328 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23501:20506:8328 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23510:22608:4498 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23510:22608:4498 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23510:5767:4874 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23510:5767:4874 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11107:1522:2238 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11107:1522:2238 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11201:9160:20283 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11201:9160:20283 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11204:7375:14211 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11204:7375:14211 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11209:3700:9543 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11209:3700:9543 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:18383:4200 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:18383:4200 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:18498:15813 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:18498:15813 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12101:13364:18623 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12101:13364:18623 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12105:16675:5419 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12105:16675:5419 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12111:24285:14165 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12111:24285:14165 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12303:19677:10126 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12303:19677:10126 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12306:10344:14123 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12306:10344:14123 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12307:24648:20289 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12307:24648:20289 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12308:9183:9681 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12308:9183:9681 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13206:15232:6139 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13206:15232:6139 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13301:8448:2202 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13301:8448:2202 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13311:20762:18000 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13311:20762:18000 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21201:12092:8613 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21201:12092:8613 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21202:12205:13195 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21202:12205:13195 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21202:26222:4443 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21202:26222:4443 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21203:5962:5682 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21203:5962:5682 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21205:3482:16840 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21205:3482:16840 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21210:23636:2933 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21210:23636:2933 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21212:16143:12028 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21212:16143:12028 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22104:10638:18631 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22104:10638:18631 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22201:4479:16355 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22201:4479:16355 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22202:10378:7268 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22202:10378:7268 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22211:23047:18649 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22211:23047:18649 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22302:4432:17140 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22302:4432:17140 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23101:22772:9601 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23101:22772:9601 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23104:10308:6652 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23104:10308:6652 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23301:24399:18627 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23301:24399:18627 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23301:5189:10818 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23301:5189:10818 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23310:7558:17437 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23310:7558:17437 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23311:6437:18219 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23311:6437:18219 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11501:23328:10989 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11501:23328:10989 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11610:5787:10996 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11610:5787:10996 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12405:8327:8357 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12405:8327:8357 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12411:7121:9115 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12411:7121:9115 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12412:14105:4338 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12412:14105:4338 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12412:4063:11743 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12412:4063:11743 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12606:2361:3908 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12606:2361:3908 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13401:14144:5697 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13401:14144:5697 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13412:22247:9627 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13412:22247:9627 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13501:14711:10076 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13501:14711:10076 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13508:14002:16085 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13508:14002:16085 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13510:6802:17757 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13510:6802:17757 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13609:21309:17618 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13609:21309:17618 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21401:18798:11090 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21401:18798:11090 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21408:22468:15210 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21408:22468:15210 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21502:4836:3285 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21502:4836:3285 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21506:25708:16770 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21506:25708:16770 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22402:1406:12046 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22402:1406:12046 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22402:3003:2905 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22402:3003:2905 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22406:10393:9781 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22406:10393:9781 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22407:19315:17664 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22407:19315:17664 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22505:4037:3712 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22505:4037:3712 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22506:17891:7182 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22506:17891:7182 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22512:11268:11008 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22512:11268:11008 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23401:4635:2697 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23401:4635:2697 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23404:12130:19903 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23404:12130:19903 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23404:21325:2382 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23404:21325:2382 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23406:9323:14463 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23406:9323:14463 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23407:9722:6667 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23407:9722:6667 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23410:7187:6127 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23410:7187:6127 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23412:12088:13946 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23412:12088:13946 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23511:10147:10973 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23511:10147:10973 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23605:26050:8590 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23605:26050:8590 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23611:23063:8637 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23611:23063:8637 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11106:16853:18513 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11106:16853:18513 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11108:5648:13711 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11108:5648:13711 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11109:2633:13249 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11109:2633:13249 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11211:17188:5523 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11211:17188:5523 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12101:9525:11994 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12101:9525:11994 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12107:11186:19888 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12107:11186:19888 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12201:25205:1134 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12201:25205:1134 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12302:25078:10666 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12302:25078:10666 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12309:5215:6536 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12309:5215:6536 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13101:12076:10316 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13101:12076:10316 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13108:2806:2467 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13108:2806:2467 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13201:17833:13288 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13201:17833:13288 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13303:10841:4205 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13303:10841:4205 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13307:3744:16642 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13307:3744:16642 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21105:16295:19660 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21105:16295:19660 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21106:9775:11238 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21106:9775:11238 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21204:16199:1105 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21204:16199:1105 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21210:25160:10034 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21210:25160:10034 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22102:4681:10263 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22102:4681:10263 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22109:3118:17679 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22109:3118:17679 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22205:20584:2684 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22205:20584:2684 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22206:13055:8690 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22206:13055:8690 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22211:23696:2843 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22211:23696:2843 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22212:25808:9105 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22212:25808:9105 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23102:12733:18841 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23102:12733:18841 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23107:4997:2662 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23107:4997:2662 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23111:15892:10776 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23111:15892:10776 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23201:19887:14247 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23201:19887:14247 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23307:21644:12936 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23307:21644:12936 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23309:21999:18104 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23309:21999:18104 2:N:0:GTCTTAGT' because it was < 2 characters long
8429465 reads; of these:
  8429465 (100.00%) were paired; of these:
    1519531 (18.03%) aligned concordantly 0 times
    847942 (10.06%) aligned concordantly exactly 1 time
    6061992 (71.91%) aligned concordantly >1 times
    ----
    1519531 pairs aligned concordantly 0 times; of these:
      6924 (0.46%) aligned discordantly 1 time
    ----
    1512607 pairs aligned 0 times concordantly or discordantly; of these:
      3025214 mates make up the pairs; of these:
        2175785 (71.92%) aligned 0 times
        37305 (1.23%) aligned exactly 1 time
        812124 (26.85%) aligned >1 times
87.09% overall alignment rate
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11404:12364:17923 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11404:12364:17923 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11404:17430:14212 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11404:17430:14212 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11408:10270:8587 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11408:10270:8587 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11408:9828:15664 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11408:9828:15664 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11611:8171:14634 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:11611:8171:14634 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12408:23869:16361 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12408:23869:16361 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:16124:6106 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12411:16124:6106 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12506:5121:14889 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:12506:5121:14889 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13404:13168:19189 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13404:13168:19189 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13407:18037:17627 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13407:18037:17627 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13408:11655:5964 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13408:11655:5964 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13503:12586:15790 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13503:12586:15790 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13509:17255:18141 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13509:17255:18141 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13608:11989:6141 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13608:11989:6141 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13612:16700:12051 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:13612:16700:12051 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21401:19530:2100 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:21401:19530:2100 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22401:18059:9263 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22401:18059:9263 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22402:22481:14814 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22402:22481:14814 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22408:2169:19947 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22408:2169:19947 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22506:5940:8498 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22506:5940:8498 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22509:17900:8733 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22509:17900:8733 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22609:21111:18022 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:22609:21111:18022 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23510:2972:11121 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23510:2972:11121 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23512:26834:18930 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:3:23512:26834:18930 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11102:7474:3272 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11102:7474:3272 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11107:4631:19399 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11107:4631:19399 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11108:16843:9824 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11108:16843:9824 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11304:15336:3254 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11304:15336:3254 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:16927:11936 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:11307:16927:11936 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12105:11320:18516 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12105:11320:18516 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12106:5418:18184 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12106:5418:18184 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12107:24772:3472 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12107:24772:3472 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12111:25986:15838 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12111:25986:15838 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12212:18290:1644 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12212:18290:1644 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12305:9949:2965 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:12305:9949:2965 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13103:19489:10980 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13103:19489:10980 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13109:24103:18549 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13109:24103:18549 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13111:15677:19490 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13111:15677:19490 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13207:22165:11959 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:13207:22165:11959 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21104:10580:6731 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21104:10580:6731 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21112:4307:9443 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21112:4307:9443 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21205:23074:13779 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21205:23074:13779 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21305:19216:10712 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21305:19216:10712 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21310:2702:13190 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:21310:2702:13190 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22103:10029:4687 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22103:10029:4687 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22107:25126:7186 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22107:25126:7186 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22203:25068:1946 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22203:25068:1946 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22205:5621:8193 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22205:5621:8193 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22304:2895:14126 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:22304:2895:14126 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23104:19190:4946 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23104:19190:4946 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23201:21336:9827 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:1:23201:21336:9827 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11404:22877:1844 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11404:22877:1844 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11410:17674:2531 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11410:17674:2531 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11610:17667:7493 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:11610:17667:7493 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12402:12843:7084 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12402:12843:7084 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12505:20266:16282 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12505:20266:16282 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12604:9225:3805 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12604:9225:3805 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12612:21017:19758 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:12612:21017:19758 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13404:7143:8956 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13404:7143:8956 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13405:23567:17702 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13405:23567:17702 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13505:11133:12888 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13505:11133:12888 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13606:17945:3728 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13606:17945:3728 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13609:25374:3817 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:13609:25374:3817 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21403:16465:20375 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21403:16465:20375 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21406:13419:13025 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21406:13419:13025 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21504:4268:4823 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21504:4268:4823 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21509:12672:4900 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:21509:12672:4900 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22403:11857:1785 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22403:11857:1785 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22405:20398:12275 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22405:20398:12275 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22406:17035:2132 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22406:17035:2132 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22501:2317:10352 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22501:2317:10352 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22509:15718:16587 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22509:15718:16587 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22510:3844:10631 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22510:3844:10631 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22605:14773:4509 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22605:14773:4509 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22608:17612:9720 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:22608:17612:9720 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23411:25285:2657 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23411:25285:2657 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23502:17708:16179 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23502:17708:16179 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23502:25500:13992 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23502:25500:13992 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23601:16710:5352 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23601:16710:5352 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23603:23304:4408 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23603:23304:4408 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23609:24920:2468 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:4:23609:24920:2468 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11202:1444:11895 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11202:1444:11895 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11204:14216:3469 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11204:14216:3469 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11206:7508:1604 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11206:7508:1604 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11210:16259:4450 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11210:16259:4450 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11211:16613:17252 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:11211:16613:17252 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12109:19234:11563 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12109:19234:11563 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12110:24337:6337 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12110:24337:6337 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12206:20595:8547 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12206:20595:8547 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12207:24852:5603 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:12207:24852:5603 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13111:5485:8951 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13111:5485:8951 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13312:24593:13939 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:13312:24593:13939 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21104:12226:3317 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21104:12226:3317 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21111:4360:18089 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21111:4360:18089 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21205:1601:19163 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21205:1601:19163 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21308:1437:18657 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:21308:1437:18657 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22106:17517:18883 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22106:17517:18883 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22108:2145:14450 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22108:2145:14450 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22206:6158:1147 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22206:6158:1147 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22301:26032:2422 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:22301:26032:2422 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23108:20352:6685 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23108:20352:6685 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23109:11581:5802 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23109:11581:5802 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23111:5308:3761 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23111:5308:3761 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23304:17204:8547 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23304:17204:8547 2:N:0:GTCTTAGT' because it was < 2 characters long
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23312:14320:18238 2:N:0:GTCTTAGT' because length (1) <= # seed mismatches (0)
Warning: skipping mate #2 of read 'SL-NXC:HHNFTBGX5180320:HHNFTBGX5:2:23312:14320:18238 2:N:0:GTCTTAGT' because it was < 2 characters long
6616423 reads; of these:
  6616423 (100.00%) were paired; of these:
    1092755 (16.52%) aligned concordantly 0 times
    725468 (10.96%) aligned concordantly exactly 1 time
    4798200 (72.52%) aligned concordantly >1 times
    ----
    1092755 pairs aligned concordantly 0 times; of these:
      8967 (0.82%) aligned discordantly 1 time
    ----
    1083788 pairs aligned 0 times concordantly or discordantly; of these:
      2167576 mates make up the pairs; of these:
        1486245 (68.57%) aligned 0 times
        30817 (1.42%) aligned exactly 1 time
        650514 (30.01%) aligned >1 times
88.77% overall alignment rate
1985 GFF lines processed.
100000 SAM alignment record pairs processed.
200000 SAM alignment record pairs processed.
300000 SAM alignment record pairs processed.
400000 SAM alignment record pairs processed.
500000 SAM alignment record pairs processed.
600000 SAM alignment record pairs processed.
700000 SAM alignment record pairs processed.
800000 SAM alignment record pairs processed.
900000 SAM alignment record pairs processed.
1000000 SAM alignment record pairs processed.
1100000 SAM alignment record pairs processed.
1200000 SAM alignment record pairs processed.
1228422 SAM alignment pairs processed.
1985 GFF lines processed.
100000 SAM alignment record pairs processed.
200000 SAM alignment record pairs processed.
300000 SAM alignment record pairs processed.
400000 SAM alignment record pairs processed.
500000 SAM alignment record pairs processed.
600000 SAM alignment record pairs processed.
700000 SAM alignment record pairs processed.
800000 SAM alignment record pairs processed.
900000 SAM alignment record pairs processed.
1000000 SAM alignment record pairs processed.
1100000 SAM alignment record pairs processed.
1200000 SAM alignment record pairs processed.
1300000 SAM alignment record pairs processed.
1400000 SAM alignment record pairs processed.
1500000 SAM alignment record pairs processed.
1600000 SAM alignment record pairs processed.
1700000 SAM alignment record pairs processed.
1788189 SAM alignment pairs processed.
1985 GFF lines processed.
100000 SAM alignment record pairs processed.
200000 SAM alignment record pairs processed.
300000 SAM alignment record pairs processed.
400000 SAM alignment record pairs processed.
500000 SAM alignment record pairs processed.
600000 SAM alignment record pairs processed.
700000 SAM alignment record pairs processed.
800000 SAM alignment record pairs processed.
900000 SAM alignment record pairs processed.
1000000 SAM alignment record pairs processed.
1100000 SAM alignment record pairs processed.
1200000 SAM alignment record pairs processed.
1300000 SAM alignment record pairs processed.
1400000 SAM alignment record pairs processed.
1500000 SAM alignment record pairs processed.
1600000 SAM alignment record pairs processed.
1700000 SAM alignment record pairs processed.
1800000 SAM alignment record pairs processed.
1900000 SAM alignment record pairs processed.
2000000 SAM alignment record pairs processed.
2100000 SAM alignment record pairs processed.
2200000 SAM alignment record pairs processed.
2300000 SAM alignment record pairs processed.
2400000 SAM alignment record pairs processed.
2500000 SAM alignment record pairs processed.
2600000 SAM alignment record pairs processed.
2700000 SAM alignment record pairs processed.
2800000 SAM alignment record pairs processed.
2900000 SAM alignment record pairs processed.
3000000 SAM alignment record pairs processed.
3100000 SAM alignment record pairs processed.
3200000 SAM alignment record pairs processed.
3300000 SAM alignment record pairs processed.
3400000 SAM alignment record pairs processed.
3500000 SAM alignment record pairs processed.
3600000 SAM alignment record pairs processed.
3700000 SAM alignment record pairs processed.
3800000 SAM alignment record pairs processed.
3900000 SAM alignment record pairs processed.
4000000 SAM alignment record pairs processed.
4100000 SAM alignment record pairs processed.
4200000 SAM alignment record pairs processed.
4300000 SAM alignment record pairs processed.
4400000 SAM alignment record pairs processed.
4500000 SAM alignment record pairs processed.
4600000 SAM alignment record pairs processed.
4700000 SAM alignment record pairs processed.
4800000 SAM alignment record pairs processed.
4900000 SAM alignment record pairs processed.
5000000 SAM alignment record pairs processed.
5100000 SAM alignment record pairs processed.
5200000 SAM alignment record pairs processed.
5300000 SAM alignment record pairs processed.
5400000 SAM alignment record pairs processed.
5500000 SAM alignment record pairs processed.
5600000 SAM alignment record pairs processed.
5700000 SAM alignment record pairs processed.
5800000 SAM alignment record pairs processed.
5900000 SAM alignment record pairs processed.
6000000 SAM alignment record pairs processed.
6100000 SAM alignment record pairs processed.
6200000 SAM alignment record pairs processed.
6300000 SAM alignment record pairs processed.
6400000 SAM alignment record pairs processed.
6500000 SAM alignment record pairs processed.
6600000 SAM alignment record pairs processed.
6700000 SAM alignment record pairs processed.
6800000 SAM alignment record pairs processed.
6900000 SAM alignment record pairs processed.
7000000 SAM alignment record pairs processed.
7100000 SAM alignment record pairs processed.
7200000 SAM alignment record pairs processed.
7300000 SAM alignment record pairs processed.
7400000 SAM alignment record pairs processed.
7500000 SAM alignment record pairs processed.
7600000 SAM alignment record pairs processed.
7700000 SAM alignment record pairs processed.
7800000 SAM alignment record pairs processed.
7900000 SAM alignment record pairs processed.
8000000 SAM alignment record pairs processed.
8100000 SAM alignment record pairs processed.
8200000 SAM alignment record pairs processed.
8300000 SAM alignment record pairs processed.
8400000 SAM alignment record pairs processed.
8429465 SAM alignment pairs processed.
1985 GFF lines processed.
100000 SAM alignment record pairs processed.
200000 SAM alignment record pairs processed.
300000 SAM alignment record pairs processed.
400000 SAM alignment record pairs processed.
500000 SAM alignment record pairs processed.
600000 SAM alignment record pairs processed.
700000 SAM alignment record pairs processed.
800000 SAM alignment record pairs processed.
900000 SAM alignment record pairs processed.
1000000 SAM alignment record pairs processed.
1100000 SAM alignment record pairs processed.
1200000 SAM alignment record pairs processed.
1300000 SAM alignment record pairs processed.
1400000 SAM alignment record pairs processed.
1500000 SAM alignment record pairs processed.
1600000 SAM alignment record pairs processed.
1700000 SAM alignment record pairs processed.
1800000 SAM alignment record pairs processed.
1900000 SAM alignment record pairs processed.
2000000 SAM alignment record pairs processed.
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