#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=144g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2024.2

qiime tools import \
  --type 'FeatureData[Sequence]' \
  --input-path cleanedHOMD.fasta \
  --output-path HOMD_16S_otu.qza

qiime tools import \
  --type 'FeatureData[Taxonomy]' \
  --input-path HOMD_16S_rRNA_RefSeq_V15.23.qiime.taxonomy.txt \
  --output-path ref_taxonomy.qza

echo "Script completed successfully!"