#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=144g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL
echo "email sent"
module load QIIME2/2024.2
echo "module loaded"
if
qiime feature-classifier fit-classifier-naive-bayes \
    --i-reference-reads ref-seq.qza  \
    --i-reference-taxonomy ref_taxonomy.qza \
    --o-classifier HOMD-15.23-16S-29f-338r-classifier.qza; then
      echo "Classifer made!"
      echo "Script Done!"
fi