#!/bin/bash
#SBATCH -t 4:00:00
#SBATCH --nodes=1 --ntasks-per-node=1
#SBATCH --mem=144g
#SBATCH --export=NONE
#SBATCH --mail-user=alex_labossiere@uri.edu
#SBATCH --mail-type=BEGIN,END,FAIL

module load QIIME2/2024.2

qiime rescript dereplicate \
    --i-sequences silva-138.1-ssu-nr99-seqs-filt.qza \
    --i-taxa silva-138.1-ssu-nr99-tax.qza \
    --p-perc-identity 0.97 \
    --p-mode 'lca' \
    --o-dereplicated-sequences silva-138.1-ssu-c97-seqs-derep-lca.qza \
    --o-dereplicated-taxa silva-138.1-ssu-c97-tax-derep-lca.qza


echo "Script completed successfully!"