BRESEQ :: Mutation Predictions

breseq version 0.36.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
MC JC	432,166	180 bp→9 bp	coding (10‑189/198 nt)	rpsU ←	30S ribosomal protein S21
RA	717,695	T→G	intergenic (+13/‑9)	FTL_0727 → / → FTL_0728	monooxygenase family protein/hypothetical protein
MC JC	1,002,968	178 bp→7 bp	coding (11‑188/198 nt)	rpsU →	30S ribosomal protein S21
RA	1,447,131	Δ2 bp	coding (590‑591/594 nt)	isftu2 →	transposase
RA	1,713,576	G→T	G410G (GGC→GGA)	FTL_1783 ←	dihydrolipoamide succinyltransferase component of 2‑oxoglutarate dehydrogenase complex

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_007880	= 70890	448 (1.250)	140 (0.520) +36 bp	49/222	0.7	29.6%	coding (790/993 nt)	FTL_0073	hypothetical protein
*	?	NC_007880	1647317 =	435 (1.210)	140 (0.520) +36 bp	49/222	0.7	29.6%	coding (46/288 nt)	groES	co‑chaperonin GroES
*	?	NC_007880	774189 =	431 (1.200)	90 (0.330) +36 bp	44/222	0.9	21.6%	coding (58/807 nt)	FTL_0788	glutamine amidotransferases class‑II family protein
*	?	NC_007880	1647317 =	435 (1.210)	90 (0.330) +36 bp	44/222	0.9	21.6%	coding (46/288 nt)	groES	co‑chaperonin GroES
*	?	NC_007880	= 952312	229 (0.640)	85 (0.310) +36 bp	31/222	1.7	25.3%	coding (390/603 nt)	FTL_0982	DJ‑1/PfpI family protein
*	?	NC_007880	1647317 =	435 (1.210)	85 (0.310) +36 bp	31/222	1.7	25.3%	coding (46/288 nt)	groES	co‑chaperonin GroES
*	?	NC_007880	1647317 =	435 (1.210)	3353 (12.260) +35 bp	133/224	0.0	91.0%	coding (46/288 nt)	groES	co‑chaperonin GroES
*	?	NC_007880	1860707 =	438 (1.220)	3353 (12.260) +35 bp	133/224	0.0	91.0%	coding (896/1548 nt)	purH	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase