declare -A array
#while IFS== read -r key value;
#do
#	array[$key]=$value
#done < $1

readarray -t lines < $1
for line in "${lines[@]}"
do
	key=(${line%%=*})
	value=${line#*=}
	array[$key]=$value
#echo $key
done
#echo ${array[1]}

#for i in "${!array[@]}"
#do
#	echo "key	: $i"
#	echo "value 	: ${array[$i]}"
#done


for i in "${!array[@]}"
do
	#echo "$i"
	search="$i"
	replace="${array[$i]}"
	#echo "$replace"
	#echo "$search"
	sed -i.bak s/%%>"$search"%%/"$replace"/ /Users/kramseylab/Desktop/Phylogenetic/RAxML_bipartitions.tree_2 
done