reinitialize
fetch 4v50

color blue, chain AU
color red, chain AR+AK+AA

#AK=us11
#AR=bS18
#AA=16s rrna


#interactions with bs18
hide all
show sticks, chain AU+AR
#possible residues of interaction (all greater than 4 Angstroms, though)
#ILE3, LYS4, CYS22, LYS19
#ile3N to arg72NE, 4.1
#lys4CE to ASp71OD2, 4.8
#cys22O to ARg72NH2, 4.5
#lys19NZ to Glu34OE2, 4.4

#interactions with us11
hide all
show sticks, chain AU+AK
#possible residues of interaction
#ILE3, ASP12, LYS4, val5, LYS24, GLU23, LEU28, ARG33, ARG34, ARG6
#lys24NZ to glu93OE1, 4.5
#ile3O, THR110CG2, 2.9
#asp12OD2, ASN100OD1, 3.3
#val5N, asn109OD1, 3.4
#lys4CA, thr110CG2 3.3


#interactions with 16s rrna
hide all
show sticks, chain AU+AA
#possible residues of interaction
#VERY difficult to tell because the rRNA is just everywhere
#ARG32, ARG34, LYS45, LYS48,TYR37, GLU38, THR41
